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Bioimage ANalysis Desktops - BAND and BARD

This service allows you to analyze your microscopy data using powerful computing resources – anywhere, without any installations required. This so-called Desktop as a Service (DaaS) provides you access to computing resources such as CPUs and GPUs to run the analysis workflows your imaging project requires. The platforms Bioimage ANalysis Desktop (BAND) and Bioimage Analysis Research Desktop (BARD) are platforms that offer cloud-based desktops accessible with a web browser for individuals and trainings courses.

What are BAND and BARD and how can you benefit from them as scientist or trainer?

BAND is a cloud-based, flexible computing environment designed to make bioimage analysis easier and more accessible for users. It offers you essential tools and computing power in a single, integrated workspace. You work within a familiar graphical desktop that opens in a web browser. You will not need physical hardware, elaborate local installations or complex environment setup.

BAND is particularly suitable for your bioimage analysis workflows that require access to cluster computing. It is ideal for researchers who need both interactive exploration and large-scale batch analysis.

Users can launch desktops with resources tailored to their specific tasks, such as the required number of CPUs, memory, or GPU acceleration.

BAND allows you to analysis of your data with software of your choice using shared high-performance hardware components.

How can you access BAND to start your powerful image analysis?

  1. FIRST TIME USERS of BAND, welcome. Initially and once, setup a login and register for access to remote desktops: 

    a) Login to LS Login: In case your local university or institution does not yet provide you access to it, register yourself first using e.g. your ORCID or GitHub logins (duration about 10 minutes). Once you can login to LS Login, you are prepared to create an account with BAND.

    b) Create an account with BAND: Access the DeNBI BAND service in your browser. You MUST check to agree to the Terms of Use and the Privacy Notice buttons to be allowed to login. (In case your browser only shows 1 checkbox, change to a different web browser.)

    As registered user: Access BAND via LS Login and you arrive at the start page of BAND. To start a new desktop session, define the settings of the analysis desktop you aim to use by selecting required hardware components such as CPUs, GPUs and storage space and get access to a desktop tailored to your needs. In case you have a running desktop session, you can re-access it from the start page of BAND and continue where you had left.

Watch this video of first steps to get access to the EMBL BAND instance and launch your first remote analysis desktop session. Check it out.
Check out this tutorial about how to comfortably run nuclei segmentation, here applying the Segment Anything Model (SAM) in Cell Profiler on a BAND remote analysis desktop instance.