Name: Dr. Mohsen Ahmadi
Institution: Leibniz Institute for Plasma Science and Technology (INP Greifswald)
Academic background: Biochemistry and microscopy
Professional experience: I am dealing with image microscopy from plasma medicine in INP Greifswald (ZIK-plasmatis). I am a biochemist that join the NFDI4Bioimage to connect the image data microscopy to the OMERO platform by sharing our knowledge regarding the minimum data information for microscopy imaging, e.g., analysis, storage, work flow, etc. and plasma medicine, e.g., work flow, metatdata, etc.
General tools: OMERO, ADAMANT, MICRO META APP, eLabFTW
Use Case involvements: Microscopy and plasma medicine: FAIR concepts for microscopy data in plasma medicine in order to integrate imaging and domain specific data into OMERO.
Related publications:
Franke, S., Paulet, L., Schäfer, J. et al. Plasma-MDS, a metadata schema for plasma science with examples from plasma technology. Sci Data 7, 439 (2020). https://doi.org/10.1038/s41597-020-00771-0.
Chaerony Siffa I, Schäfer J and Becker MM. Adamant: a JSON schema-based metadata editor for research data management workflows. F1000Research 2022, 11:475. https://doi.org/10.12688/f1000research.110875.2
Ahmadi, M., Wagner, R., Mattern, P., Plathe, N., Bekeschus, S., Becker, M. M., Stöter, T., & Weidtkamp-Peters, S. (2023). Data stewardship and research data management tools for multimodal linking of imaging data in plasma medicine. Data Stewardship goes Germany (DSgG), Dresden/Germany. Zenodo. https://doi.org/10.5281/zenodo.10069368